In a new post to his site Bob Majdak looks at using SQL in PHP and some of the challenges he's come across (some of them with his own tools). He talks about things line inline SQL, loading SQL by unique key or creating a "build object".
There is no right or wrong way, but no matter what there is no *pretty* way to do SQL inside of a PHP application. I have been having a personal debate with myself all week about how to make SQL statements nicer in an application without going to a huge DBAL package like Doctrine.
He looks at each idea and provides some of the pros and cons about each of them, noting that he hasn't quite decided on which is the best method. Some sample code is included to help clarify the points, showing the "find by unique key" version and how a more complex query might be created with the "builder object."